Secure API access to search pathology cases, build research cohorts, and export WSI data with clinical and technical…
EnglishUpload your own whole slide images to "My Cases" on CellDX, install AI widgets (public or custom), run them on uploaded slides, and retrieve results including segmentation…
English
AGENT SKILLS ATLASIncludes Cohort Builder and Slide Analyzer.
Claude Code
Codex
Cursor
GitHub Copilot
Gemini CLISupported by the Atlas install prompt. Skill-specific requirements vary.
Pack stats
What’s included
Cohort Builder
Secure API access to search pathology cases, build research cohorts, and export WSI data with clinical and technical filters
Slide Analyzer
Upload your own whole slide images to "My Cases" on CellDX, install AI widgets (public or custom), run them on uploaded slides, and retrieve results including segmentation masks
Quick start
- Choose your skills. Select individual skills above, or choose the entire pack.
- Copy the install prompt. Use Copy install prompt above the list.
- Send it to your agent. Paste into your coding agent’s chat. Your agent reviews the source and guides the setup.
Try it with your agent
After installation, start with a request like:
Use the Cohort Builder skill to help with my task.
Ask me for the context you need before getting started.Requirements & license
- A coding agent that can access your project files and install skills.
- Your agent checks each skill’s instructions, dependencies, and permissions during setup.
- Reported license for the skills shown: MIT. The author’s terms apply.