Research & Analysis Workflows

Deep research producing a fully written, source-validated literature review on an agricultural question, as a senior agricultural scientist of the relevant discipline: scope, design the method, discover and screen by journal ranking, validate every source, extract and verify evidence, synthesize, stress-test, then write and format the review through an editorial and integrity loop. Same 12-subagent machinery as food-deep-research, grounded in agriculture and multidisciplinary literature (Q1/Q2 preferred, Q4 avoided). Use standalone for an agricultural deep dive, or as the engine called by agri-research. Triggers: deep research agriculture, investigate this agronomy question, agricultural literature review, state of the evidence in soil science, deep dive crop research.

Author-guideline skill for Agriculture & Food Security (BMC / Springer Nature, open access). Use to format or check a manuscript for this BMC journal — structure, mandatory BMC declarations, numbered references, and figure specs. Triggers: submit to Agriculture & Food Security, BMC food journal guidelines, BMC declarations formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.

Author-guideline skill for Q1/Q2 agriculture journals from society, academy, and regional publishers not covered by a dedicated publisher skill: Soil (Copernicus), Plant Soil and Environment / Czech Journal of Animal Science (Czech Academy of Agricultural Sciences), CABI titles, Crop and Pasture Science (CSIRO), Animal Bioscience (AAAP), Journal of Animal Science and Technology (KSAST), Australian Journal of Grape and Wine Research (IVES), Am. J. Enology and Viticulture, Seed Science and Technology (ISTA), Scientia Agricola (USP/ESALQ), and similar. Use to format or check a manuscript for one of these agriculture journals — with the journal's source URL and default guidance. Triggers: submit to Soil Copernicus, Crop and Pasture Science, Animal Bioscience, Scientia Agricola, Czech Journal of Animal Science guidelines. Also fires when the user wants to publish on/in one of these journals, format a manuscript for it, or match its reference/citation style.

Multi-subagent manuscript system for agricultural science, written as a senior agricultural scientist of the relevant discipline: understand the field, frame questions, curate data, run statistics, build figures and tables, construct the discussion, draft, polish, and self-review — journal-aware throughout. Same machinery as food-paper, grounded in agriculture and multidisciplinary literature (Q1/Q2 preferred, Q4 avoided) and agricultural reporting standards for field trials, animal work and soils. Use to write, outline, revise, or format an agricultural paper or any section. Triggers: write my agronomy paper, draft an agricultural manuscript, soil science paper, horticulture paper, animal science manuscript, analyze my field trial and write it up, format for an agriculture journal.

Master orchestrator for the whole agricultural research-to-publication workflow, run as a senior agricultural scientist. Coordinates the agri skills — journal selection, research (agri-research or agri-deep-research), writing and analysis (agri-paper), figures (food-figure), peer review (agri-review), revision and finalization — into one governed path with quality gates. Same machinery as food-pipeline, grounded in agriculture and multidisciplinary literature (Q1/Q2 preferred, Q4 avoided). Use when the user wants the entire agricultural process managed end to end. Triggers: run the full agricultural paper workflow, take my field trial from research to submission, manage my whole agronomy project, agricultural research to publication, end-to-end agriculture paper.

Turn an agricultural-science review report, evidence brief, or manuscript into a fully EDITABLE PowerPoint (.pptx) — every title, bullet, table, and figure a native editable object, nothing flattened to an image. Same machinery as food-ppt, but for agricultural work: converts the outputs of agri-research, agri-deep-research, agri-paper, and agri-pipeline (or any Word/PDF/Markdown/txt source) into a well-designed, grounded slide deck with presenter notes on every slide. Never invents content beyond the source. Use to make slides, a presentation, a PPT, or a deck from an agricultural report or paper. Triggers: make a PPT for my agronomy paper, slides from my soil science review, presentation from my field-trial report, agricultural journal-club slides, build a deck from my crop research.

Run a comprehensive, multi-source literature and evidence-synthesis workflow for agricultural science, as a senior agricultural scientist of the relevant discipline…

Multi-reviewer peer-review system for agricultural manuscripts. Simulates an editorial panel — a coordinating editor, three domain reviewers (methodology, domain/novelty, integrity/ethics) and a devil's advocate — plus a formatting check against the target journal, all acting as senior agricultural scientists. Same machinery as food-review, including the knowledgebuilder that reads the cited sources and key field literature first, grounded in agriculture literature (Q1/Q2 preferred, Q4 avoided) and agricultural standards for field trials, experimental unit and pseudoreplication, animal ethics and soils. Triggers: review my agronomy paper, peer review agricultural manuscript, referee report soil science, critique my crop paper, pre-submission review agriculture, mock review animal science.

Author-guideline skill for Annual Review of Food Science and Technology (Annual Reviews, ISSN 1941-1413). Use to format or check an invited review for this journal — review structure, author–date Annual Reviews references, and figure specs. Triggers: submit to Annual Review of Food Science and Technology, Annual Reviews guidelines, invited food review formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.

Author-guideline skill for British Food Journal (Emerald, ISSN 0007-070X). Use to format or check a manuscript for BFJ — Emerald's required structured abstract, article classification, Harvard references, and figure specs. Triggers: submit to British Food Journal, Emerald food journal guidelines, structured abstract for BFJ. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.

Shared author-guideline skill for Cambridge University Press nutrition journals: British Journal of Nutrition, Nutrition Research Reviews, Proceedings of the Nutrition Society, Public Health Nutrition, Journal of Nutritional Science. Use to format or check a manuscript for a Cambridge nutrition journal — structure, structured abstracts, Harvard references, and figure specs. Triggers: submit to British Journal of Nutrition, Nutrition Research Reviews, Proceedings of the Nutrition Society guidelines, Cambridge nutrition formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.

Shared author-guideline skill for Cell Press journals that food & nutrition researchers publish in: Cell, Cell Metabolism, Cell Host & Microbe, Molecular Cell, Immunity, Current Biology, Cell Reports Medicine, One Earth, Joule, Matter, Chem. Use to format or check a manuscript for a Cell Press journal — structure with STAR Methods, abstract + eTOC blurb, Cell Press reference style, and figure specs. Triggers: submit to Cell, Cell Metabolism, Cell Host & Microbe guidelines, Cell Press formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.

Shared author-guideline skill for Taylor & Francis food journals: Critical Reviews in Food Science and Nutrition, Food Reviews International, International Journal of Food Properties. Use to format or check a manuscript for a T&F food journal — structure, abstract/keyword limits, Taylor & Francis reference styles, and figure specs. Triggers: submit to Critical Reviews in Food Science and Nutrition, Food Reviews International, IJFP guidelines, Taylor & Francis food formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.

Shared author-guideline skill for Elsevier food-science journals (Trends in Food Science & Technology, Food Hydrocolloids, LWT, Food Research International, Food Control, Meat Science, Food Policy, Postharvest Biology & Technology, and ~20 more). Use to format or check a manuscript for any Elsevier food journal not covered by its own skill. Covers the common Elsevier Guide-for-Authors structure, Highlights, graphical abstract, reference styles, and figure specs. Triggers: submit to an Elsevier food journal, LWT/Food Hydrocolloids/Trends guidelines, Elsevier food formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.

Author-guideline skill for Food Chemistry (Elsevier, ISSN 0308-8146). Use when preparing, formatting, or checking a manuscript for submission to Food Chemistry — structure, word/abstract limits, Highlights, graphical abstract, Elsevier numbered (Vancouver) references, and figure specs. Triggers: submit to Food Chemistry, Food Chem guidelines, format for Food Chemistry. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.

General-purpose deep research that produces a fully written, source-validated literature review on any question: scope it, design the method, discover and screen sources by journal ranking, validate every source, extract and verify evidence, synthesize, stress-test, then write and format the review (APA 7.0 by default, or a target journal's style) and polish it through an editorial + integrity review loop. Use standalone for a deep dive or literature review, or as the deep-dive engine called by food-research. Runs a 12-subagent team with iterate-to-saturation and compile↔review loops. Triggers: deep research, research this in depth, write a literature review, investigate thoroughly, comprehensive review, state of the evidence, briefing on, dig into, deep dive.

Lawfully acquire the full text of academic articles so the research and review skills can read papers, not just abstracts. Routes each article through legal open access (Unpaywall/OpenAlex/PMC/arXiv), the user's own reference-manager library (EndNote/Zotero/Mendeley PDFs), and — only with the user's own logged-in institutional browser session — their library's entitled full text, then extracts the text and writes a manifest of what was and was not obtained. Open-access articles are always downloaded and read, never left at abstract-level. Never bypasses paywalls, DRM, or logins. Use to fetch PDFs for a reference list or DOIs, get full text behind a subscription the user is entitled to, or build a full-text corpus. Triggers: download these papers, get the full text, fetch the PDFs for these DOIs, retrieve full text for my reference list, access the article through my library, build a full-text corpus.

Comprehensive figure system for food & nutrition manuscripts: analyzes the user's data, recommends the best figure(s) to make, then produces submission-grade graphics in Python or R at the target journal's spec. Handles all common scientific figure types (bar/box/violin, line/kinetic, scatter/regression, Bland–Altman, radar/sensory, chromatograms, TPA/rheology, dose–response, survival, PCA/PLS-DA, heatmaps/clustering, forest, microscopy plates, multi-panel). Use to make, create, design, revise, audit, or recommend figures/charts/plots for a food-science paper, or to work out what to plot from a dataset. If Python or R isn't chosen, ask once and remember it. Triggers: make a figure, create a figure, design a figure, what figure should I make, recommend a chart, plot my data, analyze my data and plot it, chart my results, food science figure, journal figure, scientific plotting, data visualization for a manuscript.

Shared author-guideline skill for Royal Society of Chemistry food journals: Food & Function and Sustainable Food Technology. Use to format or check a manuscript for an RSC food journal — article types, structure, RSC superscript-numbered references, and figure specs. Triggers: submit to Food & Function, Sustainable Food Technology guidelines, RSC food formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.

Multi-subagent manuscript system for food & nutrition science covering the whole research process: understand the field (literature), frame research questions, curate and analyze data, run statistics, build figures and tables, construct arguments and discussion, draft and polish the manuscript, and self-review — journal-aware throughout. Resolves the target journal first and formats to it (APA 7.0 default or a specific journal via journal-selector); routes figures through food-figure and deep literature through food-research. Use to write, outline, revise, or format a food-science paper or any section. Triggers: write my paper, draft a manuscript, food science paper, outline my paper, revise my manuscript, analyze my data and write it up, statistics for my paper, build figures for my paper, polish my manuscript, format for a journal, publish on a specific journal.

Master orchestrator for the whole food & nutrition research-to-publication workflow. Coordinates the specialist skills — each with its own subagent set — into one governed path: journal selection, research (food-research / food-deep-research), writing & analysis (food-paper), figures (food-figure), peer review (food-review), revision, and finalization. Use when the user wants the entire process managed end to end, or a project routed to the right skills with quality gates. Triggers: run the full paper workflow, take this from research to submission, manage the whole project, research to publication, end-to-end paper, orchestrate my paper.

Turn a food & nutrition review report, evidence brief, or manuscript into a fully EDITABLE PowerPoint (.pptx) that opens in PowerPoint / Keynote / Google Slides with every title, bullet, table, and figure as a native editable object — nothing flattened to an image. Converts the outputs of food-research, food-deep-research, food-paper, and food-pipeline (or any Word/PDF/Markdown/txt source) into a well-designed deck: it plans the outline, writes concise grounded slide text with presenter notes on every slide, places figures as movable picture objects, builds the .pptx via python-pptx, and QA-checks editability. Design informed by taste-skill. Use to make slides, a presentation, a PPT, or a deck from a report or paper. Triggers: make a PPT, create slides, presentation from my report, turn this review into slides, build a deck, PPTX from my paper, journal-club slides, conference presentation.

Master orchestrator for preparing research proposals and funding-application proposals in food, nutrition & agricultural science. Like food-pipeline, but for proposals: it resolves the target funding scheme's format first (headings, order, page/word limit, font, assessment criteria), then drafts from scratch (food-deep-research for the knowledge base, food-paper to write, food-review to review) or revises an existing draft after first understanding the field. Enforces the scheme's length limit and required headings and aligns content to the assessment criteria. Built-in schemes: ARC Discovery EOI, ARC Discovery Full Application, and the UoM Ag & Food project proposal; if a scheme isn't included it asks the user to upload the guideline and extracts the format. Triggers: write a grant proposal, ARC Discovery application, funding application, research proposal, project proposal, revise my grant, prepare an EOI.

Author-guideline skill for Food Quality and Safety (Oxford University Press, ISSN 2399-1399). Use to format or check a manuscript for this open-access OUP journal — structure, abstract/keyword limits, reference style, and figure specs. Triggers: submit to Food Quality and Safety, OUP food journal guidelines. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.