Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase.
EnglishInteractive visualization library. Use when you need hover info, zoom, pan, or web-embeddable charts. Best for dashboards, exploratory analysis, and presentations.
EnglishHelp users write correct R code for async, parallel, and distributed computing using mirai.
EnglishComprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data.
EnglishSystematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem…
EnglishProvide differential diagnosis for patients with suspected rare diseases based on phenotype and genetic data.
EnglishComputational analysis framework for spatial multi-omics data integration.
EnglishSystematic clinical variant interpretation from raw variant calls to ACMG-classified recommendations with structural impact analysis.
English
AGENT SKILLS ATLASIncludes Clinicaltrials Database, Geo Database, Posit R Mirai, and other workflows.
Claude Code
Codex
Cursor
GitHub Copilot
Gemini CLISupported by the Atlas install prompt. Skill-specific requirements vary.
Pack stats
What’s included
Clinicaltrials Database
Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research an
Geo Database
Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and ex
Plotly
Interactive visualization library. Use when you need hover info, zoom, pan, or web-embeddable charts. Best for dashboards, exploratory analysis, and presentations. For st
Posit R Mirai
Help users write correct R code for async, parallel, and distributed computing using mirai. Use when users need to: run R code asynchronously or in parallel, write mirai
Pyhealth
Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when working with electro
Scholar Evaluation
Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation
Tooluniverse Rare Disease Diagnosis
Provide differential diagnosis for patients with suspected rare diseases based on phenotype and genetic data. Matches symptoms to HPO terms, identifies candidate diseases
Tooluniverse Spatial Omics Analysis
Computational analysis framework for spatial multi-omics data integration. Given spatially variable genes (SVGs), spatial domain annotations, tissue type, and disease con
Tooluniverse Variant Interpretation
Systematic clinical variant interpretation from raw variant calls to ACMG-classified recommendations with structural impact analysis. Aggregates evidence from ClinVar, gn
Quick start
- Choose your skills. Select individual skills above, or choose the entire pack.
- Copy the install prompt. Use Copy install prompt above the list.
- Send it to your agent. Paste into your coding agent’s chat. Your agent reviews the source and guides the setup.
Try it with your agent
After installation, start with a request like:
Use the Clinicaltrials Database skill to help with my task.
Ask me for the context you need before getting started.Requirements & license
- A coding agent that can access your project files and install skills.
- Your agent checks each skill’s instructions, dependencies, and permissions during setup.
- Reported license for the skills shown: MIT. The author’s terms apply.