Select and apply colorblind-friendly palettes for scientific figures using viridis, RColorBrewer, and custom color schemes.
EnglishCall m6A peaks from MeRIP-seq IP vs input comparisons. Use when identifying m6A modification sites from methylated RNA immunoprecipitation data.
EnglishPolish genome assemblies to reduce errors using short reads (Pilon), long reads (Racon), or ONT-specific tools (medaka).
EnglishCalculate translation efficiency (TE) as the ratio of ribosome occupancy to mRNA abundance.
EnglishAnalyze multi-modal single-cell data (CITE-seq, Multiome, spatial).
EnglishSpecialist AI agent persona for computational biology and bioinformatics research. Expert in protein structure analysis, molecular docking, kinase biology, drug-target interactions, sequence analysis, and scientific data visualization.
EnglishGenerate protein/antibody designs using available compute providers (Tamarind, local GPU). Creates tool inputs, submits jobs, and monitors progress.
EnglishHumanize non-human antibody sequences for therapeutic development. Framework analysis, CDR grafting onto human germlines, back-mutation identification, T-cell epitope prediction, humanness scoring, and humanized variant panel generation.
EnglishTarget analysis, literature review, prior art search, epitope identification using PDB, UniProt, SAbDab, and research MCP tools.
English
AGENT SKILLS ATLASIncludes Bio Alignment Msa Parsing, Bio Data Visualization Color Palettes, Bio Epitranscriptomics M6a Peak Calling, and other workflows.
Claude Code
Codex
Cursor
GitHub Copilot
Gemini CLISupported by the Atlas install prompt. Skill-specific requirements vary.
Pack stats
What’s included
Bio Alignment Msa Parsing
Parse and analyze multiple sequence alignments using Biopython. Extract sequences, identify conserved regions, analyze gaps, work with annotations, and manipulate alignme
Bio Data Visualization Color Palettes
Select and apply colorblind-friendly palettes for scientific figures using viridis, RColorBrewer, and custom color schemes. Use when selecting colorblind-friendly palette
Bio Epitranscriptomics M6a Peak Calling
Call m6A peaks from MeRIP-seq IP vs input comparisons. Use when identifying m6A modification sites from methylated RNA immunoprecipitation data.
Bio Genome Assembly Assembly Polishing
Polish genome assemblies to reduce errors using short reads (Pilon), long reads (Racon), or ONT-specific tools (medaka). Essential for improving long-read assembly accura
Bio Ribo Seq Translation Efficiency
Calculate translation efficiency (TE) as the ratio of ribosome occupancy to mRNA abundance. Use when comparing translational regulation between conditions or identifying
Bio Single Cell Multimodal Integration
Analyze multi-modal single-cell data (CITE-seq, Multiome, spatial). Use when working with data that measures multiple modalities per cell like RNA + protein or RNA + ATAC
Bioinformatics Researcher
Specialist AI agent persona for computational biology and bioinformatics research. Expert in protein structure analysis, molecular docking, kinase biology, drug-target interactions, sequence analysis, and scientific data visualization.
By Design
Generate protein/antibody designs using available compute providers (Tamarind, local GPU). Creates tool inputs, submits jobs, and monitors progress.
By Humanization
Humanize non-human antibody sequences for therapeutic development. Framework analysis, CDR grafting onto human germlines, back-mutation identification, T-cell epitope prediction, humanness scoring, and humanized variant panel generation.
By Research
Target analysis, literature review, prior art search, epitope identification using PDB, UniProt, SAbDab, and research MCP tools.
Quick start
- Choose your skills. Select individual skills above, or choose the entire pack.
- Copy the install prompt. Use Copy install prompt above the list.
- Send it to your agent. Paste into your coding agent’s chat. Your agent reviews the source and guides the setup.
Try it with your agent
After installation, start with a request like:
Use the Bio Alignment Msa Parsing skill to help with my task.
Ask me for the context you need before getting started.Requirements & license
- A coding agent that can access your project files and install skills.
- Your agent checks each skill’s instructions, dependencies, and permissions during setup.
- Reported license for the skills shown: GPL-3.0. The author’s terms apply.