Query the KBase BERDL (BER Data Lakehouse) databases. Use when the user asks to explore pangenome data, query species information, get genome statistics, analyze gene clusters, access functional annotations, or query biochemistry data.
EnglishGet started with the BERIL Research Observatory. Use when a user is new, wants orientation, or asks what they can do.
EnglishRun arbitrary scripts on KBase compute nodes via the CDM Task Service (CTS). Use when the user needs to move compute off their notebook or local machine — e.g., running bioinformatics tools, heavy data processing, or anything that benefits from dedicated CPU/memory on a remote node.
EnglishTurn a research interest, live BERDL data, and literature into a detailed, pre-registered RESEARCHPLAN.md with competing hypotheses, falsification tests, and decision criteria. Use when a project is ready to move from exploration to a frozen plan, or to resume an exploration/proposed project.
English
AGENT SKILLS ATLASIncludes Berdl Start, Remote Compute, Research Plan, and other workflows.
Claude Code
Codex
Cursor
GitHub Copilot
Gemini CLISupported by the Atlas install prompt. Skill-specific requirements vary.
Pack stats
What’s included
Berdl
Query the KBase BERDL (BER Data Lakehouse) databases. Use when the user asks to explore pangenome data, query species information, get genome statistics, analyze gene clusters, access functional annotations, or query biochemistry data.
Berdl Start
Get started with the BERIL Research Observatory. Use when a user is new, wants orientation, or asks what they can do.
Remote Compute
Run arbitrary scripts on KBase compute nodes via the CDM Task Service (CTS). Use when the user needs to move compute off their notebook or local machine — e.g., running bioinformatics tools, heavy data processing, or anything that benefits from dedicated CPU/memory on a remote node.
Research Plan
Turn a research interest, live BERDL data, and literature into a detailed, pre-registered RESEARCHPLAN.md with competing hypotheses, falsification tests, and decision criteria. Use when a project is ready to move from exploration to a frozen plan, or to resume an exploration/proposed project.
Quick start
- Choose your skills. Select individual skills above, or choose the entire pack.
- Copy the install prompt. Use Copy install prompt above the list.
- Send it to your agent. Paste into your coding agent’s chat. Your agent reviews the source and guides the setup.
Try it with your agent
After installation, start with a request like:
Use the Berdl skill to help with my task.
Ask me for the context you need before getting started.Requirements & license
- A coding agent that can access your project files and install skills.
- Your agent checks each skill’s instructions, dependencies, and permissions during setup.
- Reported license for the skills shown: AGPL-3.0. The author’s terms apply.