Python implementation rules for Miller-Jensen lab analysis code — uv environments, ruff, portable paths, and notebook-vs-script discipline. TRIGGER when editing .py files, writing analysis scripts, structuring a Python project, or refactoring notebook code into reusable modules in a Miller-Jensen lab repository.
EnglishSingle-molecule FISH spot detection and per-cell transcript counts for Miller-Jensen lab bursting / HIV-transcription work. TRIGGER when working with smFISH images, big-fish, FISH-quant, RS-FISH, per-cell transcript count tables, or fitting bursting models.
English
AGENT SKILLS ATLASIncludes Coding in Python and other workflows.
Claude Code
Codex
Cursor
GitHub Copilot
Gemini CLISupported by the Atlas install prompt. Skill-specific requirements vary.
Pack stats
What’s included
Coding in Python
Python implementation rules for Miller-Jensen lab analysis code — uv environments, ruff, portable paths, and notebook-vs-script discipline. TRIGGER when editing .py files, writing analysis scripts, structuring a Python project, or refactoring notebook code into reusable modules in a Miller-Jensen lab repository.
Smfish
Single-molecule FISH spot detection and per-cell transcript counts for Miller-Jensen lab bursting / HIV-transcription work. TRIGGER when working with smFISH images, big-fish, FISH-quant, RS-FISH, per-cell transcript count tables, or fitting bursting models.
Quick start
- Choose your skills. Select individual skills above, or choose the entire pack.
- Copy the install prompt. Use Copy install prompt above the list.
- Send it to your agent. Paste into your coding agent’s chat. Your agent reviews the source and guides the setup.
Try it with your agent
After installation, start with a request like:
Use the Coding in Python skill to help with my task.
Ask me for the context you need before getting started.Requirements & license
- A coding agent that can access your project files and install skills.
- Your agent checks each skill’s instructions, dependencies, and permissions during setup.
- Reported license for the skills shown: Unlicense. The author’s terms apply.