Style rules for academic prose in ML / computational biology venues. Loaded by draft-writer and prose-polisher to ensure consistent voice and avoid LLM-typical patterns.
EnglishArgumentation template for constructing paper sections. Each claim must be paired with explicit evidence and an explicit narrative function. Loaded by outline-architect and draft-writer.
EnglishEstablished figure and table patterns for ML / computational biology papers. Loaded by writing-brainstormer to ground figure suggestions in conventional patterns rather than improvising. Includes references to type-specific guides.
EnglishWork on the LaTeX thesis or LaTeXML HTML output. Use for build/lint/serve commands, LaTeX style rules, HTML pipeline notes, or assets conventions.
EnglishUse when designing a paper's argumentative skeleton from a findings inventory and a chosen thesis, before any prose is written. Covers skeleton selection (IMRaD/benchmark/position/bio-applied), section-level claim-evidence chain construction, load-bearing claim identification, word-budget allocation, and conclusion-no-new-claims sanity checks.
EnglishUse when reviewing an assembled paper draft for ML or computational biology venues. Covers persona calibration (overworked, not-nice senior reviewer), 5-step process (first-pass prediction, section critique, cross-cutting checks, hostile devil's advocate, rubric-grounded scoring), and the read-only constraint (never modify the draft).
EnglishUse when copy-editing an academic draft (LaTeX or markdown) at the line level. Covers allowed edits (typos, grammar, forbidden-pattern replacement, sentence tightening), forbidden edits (wholesale paragraph rewrites, voice replacement, claim modification, structural changes), the multi-pass procedure, the [NEEDS-AUTHOR-DECISION] marker, and changelog format.
EnglishUse when scanning a code/results repo to inventory experimental findings for a paper, or doing online literature lookups during paper-writing. Covers manifest construction, neutral finding inventory, gap analysis, narrative-hook surfacing, web-search verification (DOI/arXiv required before any citation enters the paper), and the repo-write confirmation gate (never modify files outside papers/ / without explicit user OK).
English0-100 scoring rubric for peer-reviewer subagent. Defines dimensions, weights, and behavioral indicators for each score range. Loaded only by peer-reviewer.
English
AGENT SKILLS ATLASIncludes Academic Style, Claim Evidence Chain, Figure Design Patterns, and other workflows.
Claude Code
Codex
Cursor
GitHub Copilot
Gemini CLISupported by the Atlas install prompt. Skill-specific requirements vary.
Pack stats
What’s included
Academic Style
Style rules for academic prose in ML / computational biology venues. Loaded by draft-writer and prose-polisher to ensure consistent voice and avoid LLM-typical patterns.
Claim Evidence Chain
Argumentation template for constructing paper sections. Each claim must be paired with explicit evidence and an explicit narrative function. Loaded by outline-architect and draft-writer.
Figure Design Patterns
Established figure and table patterns for ML / computational biology papers. Loaded by writing-brainstormer to ground figure suggestions in conventional patterns rather than improvising. Includes references to type-specific guides.
Latex Conventions
Work on the LaTeX thesis or LaTeXML HTML output. Use for build/lint/serve commands, LaTeX style rules, HTML pipeline notes, or assets conventions.
Outline Construction
Use when designing a paper's argumentative skeleton from a findings inventory and a chosen thesis, before any prose is written. Covers skeleton selection (IMRaD/benchmark/position/bio-applied), section-level claim-evidence chain construction, load-bearing claim identification, word-budget allocation, and conclusion-no-new-claims sanity checks.
Peer Review Protocol
Use when reviewing an assembled paper draft for ML or computational biology venues. Covers persona calibration (overworked, not-nice senior reviewer), 5-step process (first-pass prediction, section critique, cross-cutting checks, hostile devil's advocate, rubric-grounded scoring), and the read-only constraint (never modify the draft).
Prose Editing Discipline
Use when copy-editing an academic draft (LaTeX or markdown) at the line level. Covers allowed edits (typos, grammar, forbidden-pattern replacement, sentence tightening), forbidden edits (wholesale paragraph rewrites, voice replacement, claim modification, structural changes), the multi-pass procedure, the [NEEDS-AUTHOR-DECISION] marker, and changelog format.
Repo Scanning Protocol
Use when scanning a code/results repo to inventory experimental findings for a paper, or doing online literature lookups during paper-writing. Covers manifest construction, neutral finding inventory, gap analysis, narrative-hook surfacing, web-search verification (DOI/arXiv required before any citation enters the paper), and the repo-write confirmation gate (never modify files outside papers/ / without explicit user OK).
Reviewer Rubric
0-100 scoring rubric for peer-reviewer subagent. Defines dimensions, weights, and behavioral indicators for each score range. Loaded only by peer-reviewer.
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Use the Academic Style skill to help with my task.
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