Claude Code
Codex
Cursor
GitHub Copilot
Gemini CLIAbout this skill
Use when you have raw FASTQ sequencing reads (single-end or paired-end) and a reference transcriptome FASTA file, and you need to determine which transcript(s) each read aligns to in order to quantify transcript abundance. This is the core mapping stage in a salmon quant workflow;
Quick start
- Copy the install prompt. Use the green button above this README.
- Send it to your agent. Paste it into your coding agent’s chat and send.
- Review the setup. Your agent checks the skill’s instructions, requirements, and installation scope.
Review, license & listing details
Review the source before using this skill
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Automated security scan: Partial
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0 potential findings · Scanned 11/4/2026 · Scanner 0.2.1
Content SHA-256: 08f463d287bbbf85b16861c402559f95c610983b780840033cda2b80965ab510
About this listing
- Category
- Content & writing
- Reported license
- Apache-2.0
- Listing language (estimated)
- English
- Review status
- Not individually reviewed
- Agent compatibility
- Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.