Saddle Matrix Computation from Binned Tracks

About this skill

Use when you have a cooler Hi-C contact matrix file and an associated eigenvector track (from prior eigscis calculation or similar), and you need to quantify the preferential interaction patterns between A and B chromatin compartments.

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Original listing metadata

Original name

saddle-matrix-computation-from-binned-tracks

Original description

Use when you have a cooler Hi-C contact matrix file and an associated eigenvector track (from prior eigs_cis calculation or similar), and you need to quantify the preferential interaction patterns between A and B chromatin compartments.

About this listing

Category: General
Reported license: Apache-2.0
Listing language (estimated): English
Review status: Not individually reviewed
Agent compatibility: Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.