Gene Level Summarization from Transcripts

About this skill

Use when you have transcript-level quantification files (salmon quant.sf.gz, kallisto h5, or Sailfish output) and need to perform gene-level differential expression analy

Quick start

Copy the install prompt. Use the green button above this README.
Send it to your agent. Paste it into your coding agent’s chat and send.
Review the setup. Your agent checks the skill’s instructions, requirements, and installation scope.

Installation guide →

Review, license & listing details

Review the source before using this skill

This is an imported listing. We haven’t certified its safety, license, or compatibility. Skills may include executable scripts.

Automated security scan: Partial

Only SKILL.md was scanned. Supporting files and scripts were not checked. No safety grade has been assigned.

0 potential findings · Scanned 11/4/2026 · Scanner 0.2.1

Content SHA-256: 2ac074fbcd65cd80a12ffc7cc3dcd0fb2a476b77ff869b23cec9b8b4edfc97f4

About scan coverage and limitations

Original listing metadata

Original name

gene-level-summarization-from-transcripts

Original description

Use when you have transcript-level quantification files (salmon quant.sf.gz, kallisto h5, or Sailfish output) and need to perform gene-level differential expression analy — from HolobiomicsLab/asb-skill-collections

About this listing

Category: Content & writing
Reported license: Apache-2.0
Listing language (estimated): English
Review status: Not individually reviewed
Agent compatibility: Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.