Bio Atac Seq Atac Peak Calling | Agent Skills Atlas

About this skill

Call accessible chromatin regions from ATAC-seq BAM files using MACS3, MACS2, Genrich, or HMMRATAC. Use when identifying open chromatin from aligned ATAC-seq, choosing between point-source vs HMM peak callers, applying ENCODE-style pseudoreplicate IDR, removing blacklist regions, or fixing 501bp consensus peaks for downstream differential analysis.

Quick start

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Review, license & listing details

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0 potential findings · Scanned 11/4/2026 · Scanner 0.2.1

Content SHA-256: aaf79f23f81d2d9a15437a08d53a5305717eaf60e480396606e431133171eaa8

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Original listing metadata

Original name

bio-atac-seq-atac-peak-calling

Original description

About this listing

Category: General
Reported license: Not specified
Listing language (estimated): English
Review status: Not individually reviewed
Agent compatibility: Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.