Sam Record Parsing and Validation

About this skill

Use when salmon quant is run with the --writeMappings/-z flag and you need to verify that all mapped reads appear in the SAM output file.

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0 potential findings · Scanned 11/4/2026 · Scanner 0.2.1

Content SHA-256: 251124f26a5927bc8976053c53bdad8b9b368060c559d762a48465425f921963

Original listing metadata

sam-record-parsing-and-validation

Use when salmon quant is run with the --writeMappings/-z flag and you need to verify that all mapped reads appear in the SAM output file.

Category: General
Reported license: Apache-2.0
Listing language (estimated): English
Review status: Not individually reviewed
Agent compatibility: Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.