Claude Code
Codex
Cursor
GitHub Copilot
Gemini CLIAbout this skill
Assign cells to their sample of origin from cell or nucleus hashing (CITE-seq HTOs, MULTI-seq lipid/cholesterol tags, CellPlex CMOs) and call cross-sample doublets using Seurat HTODemux/MULTIseqDemux, hashsolo, demuxEM, GMM-Demux, and demuxmix. Use when assigning pooled hashed cells back to their sample, calling cross-sample doublets from HTO counts, choosing a demultiplexing method, deciding between hashtag and genetic demultiplexing, or rescuing an oversized Negative pile from weak HTO staining or ambient spillover.
Quick start
- Copy the install prompt. Use the green button above this README.
- Send it to your agent. Paste it into your coding agent’s chat and send.
- Review the setup. Your agent checks the skill’s instructions, requirements, and installation scope.
Review, license & listing details
This is an imported listing. We haven’t certified its safety, license, or compatibility. Skills may include executable scripts.
Only SKILL.md was scanned. Supporting files and scripts were not checked. No safety grade has been assigned.
0 potential findings · Scanned 11/4/2026 · Scanner 0.2.1
Content SHA-256: f7de86c7ad7510b955853cb02e5caae0e938aa80b7d0b838deca7fe88b1f2528
About this listing
- Category
- General
- Reported license
- Not specified
- Listing language (estimated)
- English
- Review status
- Not individually reviewed
- Agent compatibility
- Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.