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Bio Single Cell Differential Abundance

Agent skill
1 skill

Test whether cell-type proportions or composition changed between conditions in single-cell data using Milo (miloR), scCODA, sccomp, and propeller. Use when comparing cell-type proportions / composition between conditions, asking which populations expanded or contracted with treatment or disease, running neighborhood-level (cluster-free) abundance testing, or guarding against compositional shifts that masquerade as differential expression.

Install with
Claude CodeCodexCursorGitHub CopilotGemini CLI

Supported by the Atlas install prompt. Skill-specific requirements vary.

Skill stats

Skills1CategoryEngineeringStars0

About this skill

Test whether cell-type proportions or composition changed between conditions in single-cell data using Milo (miloR), scCODA, sccomp, and propeller. Use when comparing cell-type proportions / composition between conditions, asking which populations expanded or contracted with treatment or disease, running neighborhood-level (cluster-free) abundance testing, or guarding against compositional shifts that masquerade as differential expression.

Quick start

  1. Copy the install prompt. Use the green button above this README.
  2. Send it to your agent. Paste it into your coding agent’s chat and send.
  3. Review the setup. Your agent checks the skill’s instructions, requirements, and installation scope.
Review, license & listing details
Review the source before using this skill

This is an imported listing. We haven’t certified its safety, license, or compatibility. Skills may include executable scripts.

Automated security scan: Partial

Only SKILL.md was scanned. Supporting files and scripts were not checked. No safety grade has been assigned.

0 potential findings · Scanned 11/4/2026 · Scanner 0.2.1

Content SHA-256: 72ffbb2626ab5cac53d71b5e704346c5e62f4af7441fb322754719c5372f523f

About scan coverage and limitations

About this listing

Category
Engineering
Reported license
Not specified
Listing language (estimated)
English
Review status
Not individually reviewed
Agent compatibility
Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.
Bio Single Cell Differential Abundance | Agent Skills Atlas