Count Matrix Format Validation | Agent Skills Atlas

About this skill

Use when after constructing a count matrix from transcript quantification files (via tximport, HTSeq, featureCounts, or direct alignment) and before running DESeq() differential expression analysis.

Quick start

Copy the install prompt. Use the green button above this README.
Send it to your agent. Paste it into your coding agent’s chat and send.
Review the setup. Your agent checks the skill’s instructions, requirements, and installation scope.

Installation guide →

Review, license & listing details

Review the source before using this skill

This is an imported listing. We haven’t certified its safety, license, or compatibility. Skills may include executable scripts.

Automated security scan: Partial

Only SKILL.md was scanned. Supporting files and scripts were not checked. No safety grade has been assigned.

0 potential findings · Scanned 11/4/2026 · Scanner 0.2.1

Content SHA-256: e03076817cf6bba31b3aa233e8f8ee09b6b99635223653ddaf17f5602c61cc32

About scan coverage and limitations

Original listing metadata

Original name

count-matrix-format-validation

Original description

Use when after constructing a count matrix from transcript quantification files (via tximport, HTSeq, featureCounts, or direct alignment) and before running DESeq() differential expression analysis.

About this listing

Category: Content & writing
Reported license: Apache-2.0
Listing language (estimated): English
Review status: Not individually reviewed
Agent compatibility: Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.