AGENT SKILLS ATLASOcean Genomics
Comprehensive bioinformatics and ocean genomics skill for eDNA metabarcoding, metagenomics, protein structure prediction, and marine biodiversity analysis. Use when: (1) Working with DNA/RNA sequences (FASTQ, FASTA, SAM/BAM, VCF files), (2) Running BLAST, QIIME2, Kraken2, or Nextflow pipelines, (3) Predicting protein structures via AlphaFold, ESMFold, or ColabFold, (4) Analyzing environmental DNA (eDNA) from marine samples, (5) Querying marine databases (OBIS, BOLD, DOO, GenBank, UniProt), (6) Using biological foundation models (Evo 2, ESM-2, ProGen3), (7) Setting up MCP servers for bioinformatics (gget-mcp, bio-mcp), (8) Building agentic bioinformatics workflows, (9) Ocean biodiversity research, deep-sea species discovery, extremophile enzyme characterization, (10) Any task involving genomics, proteomics, transcriptomics, or computational biology.
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About this skill
Comprehensive bioinformatics and ocean genomics skill for eDNA metabarcoding, metagenomics, protein structure prediction, and marine biodiversity analysis. Use when: (1) Working with DNA/RNA sequences (FASTQ, FASTA, SAM/BAM, VCF files), (2) Running BLAST, QIIME2, Kraken2, or Nextflow pipelines, (3) Predicting protein structures via AlphaFold, ESMFold, or ColabFold, (4) Analyzing environmental DNA (eDNA) from marine samples, (5) Querying marine databases (OBIS, BOLD, DOO, GenBank, UniProt), (6) Using biological foundation models (Evo 2, ESM-2, ProGen3), (7) Setting up MCP servers for bioinformatics (gget-mcp, bio-mcp), (8) Building agentic bioinformatics workflows, (9) Ocean biodiversity research, deep-sea species discovery, extremophile enzyme characterization, (10) Any task involving genomics, proteomics, transcriptomics, or computational biology.
Quick start
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Original listing metadata
Original name
ocean-genomicsOriginal description
Comprehensive bioinformatics and ocean genomics skill for eDNA metabarcoding, metagenomics, protein structure prediction, and marine biodiversity analysis. Use when: (1) Working with DNA/RNA sequences (FASTQ, FASTA, SAM/BAM, VCF files), (2) Running BLAST, QIIME2, Kraken2, or Nextflow pipelines, (3) Predicting protein structures via AlphaFold, ESMFold, or ColabFold, (4) Analyzing environmental DNA (eDNA) from marine samples, (5) Querying marine databases (OBIS, BOLD, DOO, GenBank, UniProt), (6) Using biological foundation models (Evo 2, ESM-2, ProGen3), (7) Setting up MCP servers for bioinformatics (gget-mcp, bio-mcp), (8) Building agentic bioinformatics workflows, (9) Ocean biodiversity research, deep-sea species discovery, extremophile enzyme characterization, (10) Any task involving genomics, proteomics, transcriptomics, or computational biology.
About this listing
- Category
- Content & writing
- Reported license
- MIT
- Listing language (estimated)
- English
- Review status
- Not individually reviewed
- Agent compatibility
- Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.
Claude Code
Codex
Cursor
GitHub Copilot
Gemini CLI