Claude Code
Codex
Cursor
GitHub Copilot
Gemini CLIAbout this skill
Use when the user needs to work with single-cell RNA-seq data using CellWhisperer: processing datasets for the interactive web app, scoring/annotating cells' types and states with free-text queries, or loading CellWhisperer as a Python library for local inference. Triggers on: "cellwhisperer", "cell type annotation", "scRNA-seq analysis", "single-cell scoring", "cellxgene", or any request involving transcriptome-to-text similarity scoring (e.g. when the user asks for specific attributes/properties of cells, including their type and state).
Quick start
- Copy the install prompt. Use the green button above this README.
- Send it to your agent. Paste it into your coding agent’s chat and send.
- Review the setup. Your agent checks the skill’s instructions, requirements, and installation scope.
Review, license & listing details
This is an imported listing. We haven’t certified its safety, license, or compatibility. Skills may include executable scripts.
Only SKILL.md was scanned. Supporting files and scripts were not checked. No safety grade has been assigned.
0 potential findings · Scanned 11/4/2026 · Scanner 0.2.1
Content SHA-256: d5ee472f41cedee5f66101d20a9a18e648e38bfb841de967450fd9913a4b2ee7
About this listing
- Category
- Content & writing
- Reported license
- GPL-3.0
- Listing language (estimated)
- English
- Review status
- Not individually reviewed
- Agent compatibility
- Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.