Use for any task involving the HDMA (Human Development Multiomic Atlas) repository — using its data (fragments, count matrices, Seurat/ArchR/BPCells objects, ChromBPNet models, contribution scores, bigwigs, motifs, motif instances, caCREs, ABC loops) or its code (preprocessing, global analysis, ChromBPNet training/interpretation, enhancer/ABC analysis, variant scoring, figure reproduction). Triggers on downloading data from Zenodo, finding files for a given cell type or organ, loading an object, reprocessing raw SRA data, loading tracks in a genome browser, running or adapting a pipeline step, finding which script made a figure, or setting up R/conda envs. This is a router skill — read the relevant file under references/ before acting, because the repo has non-obvious conventions (data lives on Zenodo not in-repo; cluster files are named by ClusterChromBPNet; scripts read a gitignored ROOTDIR.txt).
Install with
Claude CodeCodexCursorGitHub CopilotGemini CLI
Supported by the Atlas install prompt. Skill-specific requirements vary.
Skill stats
Skills1CategoryScience & researchStars0
About this skill
Use for any task involving the HDMA (Human Development Multiomic Atlas) repository — using its data (fragments, count matrices, Seurat/ArchR/BPCells objects, ChromBPNet models, contribution scores, bigwigs, motifs, motif instances, caCREs, ABC loops) or its code (preprocessing, global analysis, ChromBPNet training/interpretation, enhancer/ABC analysis, variant scoring, figure reproduction). Triggers on downloading data from Zenodo, finding files for a given cell type or organ, loading an object, reprocessing raw SRA data, loading tracks in a genome browser, running or adapting a pipeline step, finding which script made a figure, or setting up R/conda envs. This is a router skill — read the relevant file under references/ before acting, because the repo has non-obvious conventions (data lives on Zenodo not in-repo; cluster files are named by ClusterChromBPNet; scripts read a gitignored ROOTDIR.txt).
Quick start
Copy the install prompt. Use the green button above this README.
Send it to your agent. Paste it into your coding agent’s chat and send.
Review the setup. Your agent checks the skill’s instructions, requirements, and installation scope.
Use for any task involving the HDMA (Human Development Multiomic Atlas) repository — using its data (fragments, count matrices, Seurat/ArchR/BPCells objects, ChromBPNet models, contribution scores, bigwigs, motifs, motif instances, caCREs, ABC loops) or its code (preprocessing, global analysis, ChromBPNet training/interpretation, enhancer/ABC analysis, variant scoring, figure reproduction). Triggers on downloading data from Zenodo, finding files for a given cell type or organ, loading an object, reprocessing raw SRA data, loading tracks in a genome browser, running or adapting a pipeline step, finding which script made a figure, or setting up R/conda envs. This is a router skill — read the relevant file under references/ before acting, because the repo has non-obvious conventions (data lives on Zenodo not in-repo; cluster files are named by Cluster_ChromBPNet; scripts read a gitignored ROOT_DIR.txt).
About this listing
Category
Science & research
Reported license
GPL-3.0
Listing language (estimated)
English
Review status
Not individually reviewed
Agent compatibility
Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.
Claude Code
Codex
Cursor
GitHub Copilot
Gemini CLI