Rctd Py | Agent Skills Atlas

About this skill

GPU-accelerated Python RCTD cell type deconvolution for spatial transcriptomics (Visium, VisiumHD, Xenium, MERFISH, Slide-seq). Use when running rctd-py, when a Python alternative to R spacexr is needed, when deconvolving spatial data on GPU, when preparing h5ad references from Seurat/scanpy/CELLxGENE, or when integrating rctd-py results back into a Seurat/AnnData workflow. Covers the CLI (rctd run, rctd validate, rctd info), the Python API (runrctd, Reference, RCTDConfig), all three modes (doublet / multi / full), GPU dtype selection, per-arch eigh tuning, and result interpretation. Triggers on "rctd-py", "python rctd", "GPU RCTD", "spacexr python", "h5ad deconvolution", "spatial cell type deconvolution python", "convert spacexr reference to h5ad".

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0 potential findings · Scanned 11/4/2026 · Scanner 0.2.1

Content SHA-256: a13969f524306d51e4a456c8b3a830380c0e8f0a6db891f245305afb2410e721

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Original listing metadata

Original name

rctd-py

Original description

GPU-accelerated Python RCTD cell type deconvolution for spatial transcriptomics (Visium, VisiumHD, Xenium, MERFISH, Slide-seq). Use when running rctd-py, when a Python alternative to R spacexr is needed, when deconvolving spatial data on GPU, when preparing h5ad references from Seurat/scanpy/CELLxGENE, or when integrating rctd-py results back into a Seurat/AnnData workflow. Covers the CLI (`rctd run`, `rctd validate`, `rctd info`), the Python API (`run_rctd`, `Reference`, `RCTDConfig`), all three modes (doublet / multi / full), GPU dtype selection, per-arch eigh tuning, and result interpretation. Triggers on "rctd-py", "python rctd", "GPU RCTD", "spacexr python", "h5ad deconvolution", "spatial cell type deconvolution python", "convert spacexr reference to h5ad".

About this listing

Category: Content & writing
Reported license: GPL-3.0
Listing language (estimated): English
Review status: Not individually reviewed
Agent compatibility: Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.