Claude Code
Codex
Cursor
GitHub Copilot
Gemini CLIAbout this skill
Use when when quantifying or mapping RNA-seq reads with salmon quant using the --writeMappings (-z) flag, or in any streaming output scenario where record count discrepancies appear between reported totals (e.g., NumReads in quant.sf) and file contents (SAM record count).
Quick start
- Copy the install prompt. Use the green button above this README.
- Send it to your agent. Paste it into your coding agent’s chat and send.
- Review the setup. Your agent checks the skill’s instructions, requirements, and installation scope.
Review, license & listing details
Review the source before using this skill
This is an imported listing. We haven’t certified its safety, license, or compatibility. Skills may include executable scripts.
Automated security scan: Partial
Only SKILL.md was scanned. Supporting files and scripts were not checked. No safety grade has been assigned.
0 potential findings · Scanned 11/4/2026 · Scanner 0.2.1
Content SHA-256: 15a1567099430e5673a03ff2644e4254bbe8f5db7e70357a1e92b1ce3d7ffab6
About this listing
- Category
- General
- Reported license
- Apache-2.0
- Listing language (estimated)
- English
- Review status
- Not individually reviewed
- Agent compatibility
- Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.