Contact Frequency Smoothing Log Space

About this skill

Use when you have a precomputed expected contact frequency table (TSV with columns: distbp, contactfrequency, nvalid) derived from cooler Hi-C matrices and need to generate a smoothed, log-binned P(s) curve for downstream analysis such as TAD detection, contact probability visualization, or.

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Review, license & listing details

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Content SHA-256: afa17cdce67065f8b9e4dcfd848374d09dd1c69562db6c3d94e8cd8877713106

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Original listing metadata

Original name

contact-frequency-smoothing-log-space

Original description

Use when you have a precomputed expected contact frequency table (TSV with columns: dist_bp, contact_frequency, n_valid) derived from cooler Hi-C matrices and need to generate a smoothed, log-binned P(s) curve for downstream analysis such as TAD detection, contact probability visualization, or.

About this listing

Category: General
Reported license: Apache-2.0
Listing language (estimated): English
Review status: Not individually reviewed
Agent compatibility: Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.