Bio Epitranscriptomics Merip Preprocessing

About this skill

Aligns and QCs methylated-RNA-immunoprecipitation (MeRIP / m6A-seq) IP and input libraries using STAR or HISAT2 splice-aware mapping, samtools sort/index, IP/input matched-pair tracking, antibody-lot metadata recording, replicate concordance via deepTools multiBamSummary + plotCorrelation, IP enrichment QC via plotFingerprint and per-transcript IP/input ratio distributions, library-complexity saturation curves via PreSeq ccurve / lcextrap, and the explicit do-NOT-deduplicate convention for standard non-UMI MeRIP.

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0 potential findings · Scanned 11/4/2026 · Scanner 0.2.1

Content SHA-256: d4823ec3540df20f239fd4517b5370cbe3903bdc8ec06e4638dd5e8b28a9c564

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Original listing metadata

Original name

bio-epitranscriptomics-merip-preprocessing

Original description

Aligns and QCs methylated-RNA-immunoprecipitation (MeRIP / m6A-seq) IP and input libraries using STAR or HISAT2 splice-aware mapping, samtools sort/index, IP/input matched-pair tracking, antibody-lot metadata recording, replicate concordance via deepTools multiBamSummary + plotCorrelation, IP enrichment QC via plotFingerprint and per-transcript IP/input ratio distributions, library-complexity saturation curves via PreSeq c_curve / lc_extrap, and the explicit do-NOT-deduplicate convention for standard non-UMI MeRIP.

About this listing

Category: Content & writing
Reported license: Not specified
Listing language (estimated): English
Review status: Not individually reviewed
Agent compatibility: Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.