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K Nearest Neighbor Graph Construction

Agent skill
1 skill

Use when after PCA dimensionality reduction and scaling of normalized, log-transformed gene expression data, when you need to identify local cell neighborhoods (typically with k=15 neighbors) before applying clustering algorithms like Leiden or computing UMAP embeddings.

Install with
Claude CodeCodexCursorGitHub CopilotGemini CLI

Supported by the Atlas install prompt. Skill-specific requirements vary.

Skill stats

Skills1CategoryEngineeringStars0

About this skill

Use when after PCA dimensionality reduction and scaling of normalized, log-transformed gene expression data, when you need to identify local cell neighborhoods (typically with k=15 neighbors) before applying clustering algorithms like Leiden or computing UMAP embeddings.

Quick start

  1. Copy the install prompt. Use the green button above this README.
  2. Send it to your agent. Paste it into your coding agent’s chat and send.
  3. Review the setup. Your agent checks the skill’s instructions, requirements, and installation scope.
Review, license & listing details
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0 potential findings · Scanned 11/4/2026 · Scanner 0.2.1

Content SHA-256: 442bd438f96a0db7c50d49b5b76fdfde1b095ce80e273ff50299291bb103c7bb

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About this listing

Category
Engineering
Reported license
Apache-2.0
Listing language (estimated)
English
Review status
Not individually reviewed
Agent compatibility
Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.