Judges whether a macromolecular model (or a region of it) is reliable enough to build on, using resolution, R-free, B-factors, MolProbity geometry, and predicted-model confidence with Bio.PDB. Use when deciding if a structure or a specific region is trustworthy before docking/mechanism/measurement; reading resolution, R-work vs R-free and the R-free-minus-R-work overfitting gap; sanity-checking per-residue and mean B-factors; flagging clashscore, Ramachandran and rotamer outliers and cis non-proline peptides; validating a PREDICTED (AlphaFold/ESMFold) model via pLDDT bands and PAE before docking or molecular replacement; and interpreting cryo-EM global-vs-local resolution (FSC 0.143 half-map vs 0.5 map-model) or an NMR ensemble spread. Keywords validation, resolution, R-free, B-factor, MolProbity, clashscore, Ramachandran, rotamer, pLDDT, PAE, wwPDB, cryo-EM local resolution.
Install with
Claude CodeCodexCursorGitHub CopilotGemini CLI
Supported by the Atlas install prompt. Skill-specific requirements vary.
Skill stats
Skills1CategoryScience & researchStars0
About this skill
Judges whether a macromolecular model (or a region of it) is reliable enough to build on, using resolution, R-free, B-factors, MolProbity geometry, and predicted-model confidence with Bio.PDB. Use when deciding if a structure or a specific region is trustworthy before docking/mechanism/measurement; reading resolution, R-work vs R-free and the R-free-minus-R-work overfitting gap; sanity-checking per-residue and mean B-factors; flagging clashscore, Ramachandran and rotamer outliers and cis non-proline peptides; validating a PREDICTED (AlphaFold/ESMFold) model via pLDDT bands and PAE before docking or molecular replacement; and interpreting cryo-EM global-vs-local resolution (FSC 0.143 half-map vs 0.5 map-model) or an NMR ensemble spread. Keywords validation, resolution, R-free, B-factor, MolProbity, clashscore, Ramachandran, rotamer, pLDDT, PAE, wwPDB, cryo-EM local resolution.
Quick start
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Judges whether a macromolecular model (or a region of it) is reliable enough to build on, using resolution, R-free, B-factors, MolProbity geometry, and predicted-model confidence with Bio.PDB. Use when deciding if a structure or a specific region is trustworthy before docking/mechanism/measurement; reading resolution, R-work vs R-free and the R-free-minus-R-work overfitting gap; sanity-checking per-residue and mean B-factors; flagging clashscore, Ramachandran and rotamer outliers and cis non-proline peptides; validating a PREDICTED (AlphaFold/ESMFold) model via pLDDT bands and PAE before docking or molecular replacement; and interpreting cryo-EM global-vs-local resolution (FSC 0.143 half-map vs 0.5 map-model) or an NMR ensemble spread. Keywords validation, resolution, R-free, B-factor, MolProbity, clashscore, Ramachandran, rotamer, pLDDT, PAE, wwPDB, cryo-EM local resolution.
About this listing
Category
Science & research
Reported license
Not specified
Listing language (estimated)
English
Review status
Not individually reviewed
Agent compatibility
Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.
Claude Code
Codex
Cursor
GitHub Copilot
Gemini CLI