Claude Code
Codex
Cursor
GitHub Copilot
Gemini CLIAbout this skill
Use when before invoking pp.makefragmentfile on a BAM file from alignment or external sources, especially when the BAM's sort order is unknown or when integrating BAM files from multiple sequencing platforms (10X, standard genomics pipelines, or custom aligners) into a unified SnapATAC2 analysis.
Quick start
- Copy the install prompt. Use the green button above this README.
- Send it to your agent. Paste it into your coding agent’s chat and send.
- Review the setup. Your agent checks the skill’s instructions, requirements, and installation scope.
Review, license & listing details
Review the source before using this skill
This is an imported listing. We haven’t certified its safety, license, or compatibility. Skills may include executable scripts.
Automated security scan: Partial
Only SKILL.md was scanned. Supporting files and scripts were not checked. No safety grade has been assigned.
0 potential findings · Scanned 11/4/2026 · Scanner 0.2.1
Content SHA-256: 7c9dc4b21716b7e8c31ee719c8de9f229ca901219cc1b27cf3c3b27e80db195b
About this listing
- Category
- General
- Reported license
- Apache-2.0
- Listing language (estimated)
- English
- Review status
- Not individually reviewed
- Agent compatibility
- Atlas installation supports Claude Code, Codex, and Cursor. Skill-specific dependencies and features are checked during setup.