Use when the user asks about FastSurfer voxel space, conformed vs native geometry, --voxsize, --keepgeom, --nativeimage, the orig.mgz file, RAS vs tkRAS coordinates, AC/PC alignment, or when debugging alignment/offset bugs between FastSurfer outputs and original images. Triggers on "conform", "conformed", "orig.mgz", "voxsize", "keepgeom", "tkRAS", "scanner-RAS", "LIA orientation", "voxel grid mismatch", "alignment off by 17.5mm".
EnglishUse when user has alignment issues between FastSurfer outputs and other neuroimaging data — Mesh sits in wrong location, fixed 17.5mm offset, 90° rotation, voxel-grid mismatches, or NIfTI-vs-MGZ-affine confusion. Triggers on "alignment off", "17.5mm offset", "tkRAS bug", "scanner-RAS vs tkRAS", "FastSurfer mesh in wrong place", "vox2rastkr", "voxel grid mismatch", "cerebellum 1mm vs orig 0.7mm", "FastSurfer vs FSL alignment".
English
AGENT SKILLS ATLASIncludes Fastsurfer Conform Space and Fastsurfer Debug Conform Tkras.
Claude Code
Codex
Cursor
GitHub Copilot
Gemini CLISupported by the Atlas install prompt. Skill-specific requirements vary.
Pack stats
What’s included
Fastsurfer Conform Space
Use when the user asks about FastSurfer voxel space, conformed vs native geometry, --voxsize, --keepgeom, --nativeimage, the orig.mgz file, RAS vs tkRAS coordinates, AC/PC alignment, or when debugging alignment/offset bugs between FastSurfer outputs and original images. Triggers on "conform", "conformed", "orig.mgz", "voxsize", "keepgeom", "tkRAS", "scanner-RAS", "LIA orientation", "voxel grid mismatch", "alignment off by 17.5mm".
Fastsurfer Debug Conform Tkras
Use when user has alignment issues between FastSurfer outputs and other neuroimaging data — Mesh sits in wrong location, fixed 17.5mm offset, 90° rotation, voxel-grid mismatches, or NIfTI-vs-MGZ-affine confusion. Triggers on "alignment off", "17.5mm offset", "tkRAS bug", "scanner-RAS vs tkRAS", "FastSurfer mesh in wrong place", "vox2rastkr", "voxel grid mismatch", "cerebellum 1mm vs orig 0.7mm", "FastSurfer vs FSL alignment".
Quick start
- Choose your skills. Select individual skills above, or choose the entire pack.
- Copy the install prompt. Use Copy install prompt above the list.
- Send it to your agent. Paste into your coding agent’s chat. Your agent reviews the source and guides the setup.
Try it with your agent
After installation, start with a request like:
Use the Fastsurfer Conform Space skill to help with my task.
Ask me for the context you need before getting started.Requirements & license
- A coding agent that can access your project files and install skills.
- Your agent checks each skill’s instructions, dependencies, and permissions during setup.
- License details are not provided in these listings. Check the author’s terms before using the skills.